Right, we only have controls to describe two open cavity attic spaces, so you will need to combine some areas. The approach would depend on what you are improving.
First off, if the R-49 area is just a small peak flat and you want to improve the other two, then you could just leave that area out of the model or treat it part of the sloped roof area.
If you want to model an improvement to all three areas or just the uninsulated portion, I would combine the R-11 and R-49 areas. If you just want to improve the R-49 or R-11 areas, isolate the area you want to improve and combine the others.
Here is a forum article with a spreadsheet that can be used to combine above grade envelope areas: https://optimiserenergy.com/forums/topic/what-do-i-do-when-there-are-more-wallsceilingsfloors-than-optimiser-supports/.
Here’s a post on the various types of attic/ceiling spaces: https://optimiserenergy.com/forums/topic/where-to-put-attics-knee-walls-slopes-vaults-cheek-walls-etc/